My choice of his major works would be:
The Jewish Bride, (1667) Rijksmuseum, Amsterdam
Anatomy Lesson of Dr. Tulp (1632, Mauritshuis, The Hague).
Commisioned group portraits: Nightwatch (1642) - Rijksmuseum, Amsterdam
Militia Company (1642) - Stedelijk Museum, Amsterdam
Staalmeesters (1662) - Rijksmuseum, Amsterdam
Paintings based on bible stories:
Jacob Blessing the Children of Joseph 1656-Staatliche Museum, Kassel, Germany
The Introduction of Jesus to the Temple II (1631) - Mauritshuis,The Hague
Jeremiah Predicting the Destruction of Jerusalem (1630) - Rijksmuseum, Amsterdam
The Betrayal of Peter (1660) - Rijksmuseum, Amsterdam
Cena in Emmaus II (1648) - Louvre, Paris
Batsheba Bathing (1643) - Metropolitan Museum of Art, New York